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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs2805589 chr10:98809531 A/G 1.24E-6 407 8 12.08 15.72 KM Plot
LGG rs2814757 chr1:159072524 C/T 7.64E-6 400 17.83 13.7 15.37 KM Plot
LGG rs2814759 chr1:159070991 G/A 7.23E-6 401 17.83 13.7 15.47 KM Plot
LGG rs2814760 chr1:159070984 C/T 7.23E-6 401 17.83 13.7 15.47 KM Plot
LGG rs2832250 chr21:30557718 C/G 0 407 3.2 14.87 15.35 KM Plot
LGG rs28367503 chr16:67854534 A/G 2.16E-11 407 15.17 18.37 6.47 KM Plot
LGG rs28405495 chr22:42817792 T/C 4.8E-8 404 15.3 16.73 4.4 KM Plot
LGG rs28438493 chr1:219173488 T/A 0.000173 406 14.77 19.03 18.63 KM Plot
LGG rs28459574 chr7:33016655 C/T 2.85E-5 407 15.17 18.97 8.07 KM Plot
LGG rs28473376 chr16:67459309 A/G 9.53E-6 405 15.2 15.33 19.2 KM Plot
LGG rs28501559 chr2:55656935 C/G 5.23E-7 394 4.6 17.53 15.17 KM Plot
LGG rs28512382 chr10:1092195 G/C 1.78E-7 402 15.93 14.87 8.97 KM Plot
LGG rs28542199 chr16:67936975 T/C 6.33E-11 404 15.17 17.67 6.47 KM Plot
LGG rs285469 chr1:165489521 A/G 2.16E-8 402 6.63 15.72 14.9 KM Plot
LGG rs285470 chr1:165490785 G/A 2.02E-8 403 6.63 15.73 14.9 KM Plot